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> # R file to be executed by run runEddyProc.sh or reddy_runLocal.sh
> 
> # stop("under construction, come back on 27th of June")
> # setwd("m:/services/REddyProcWeb/work/001")
> 
> dumpfileBasename <- "RBatch_dump"
> options(error=quote({dump.frames(dumpfileBasename,TRUE); stop(paste("dump in ",dumpfileBasename))}))
> options(warn=1)		# print all warnings (instead of a summary at the end)
> 
> .libPaths( c("../../Library", .libPaths()) )	# add REddyProc/Library as first library path, see readme in Library folder
> library(REddyProc)
Warning: replacing previous import by ‘tibble::as_tibble’ when loading ‘REddyProc’
Warning: replacing previous import by ‘tibble::tibble’ when loading ‘REddyProc’
> 
> cat('Using REddyProc version ', paste(unlist(packageVersion("REddyProc")),collapse="."),"\n")
Using REddyProc version  1.1 
> Sys.time()
[1] "2018-01-27 20:01:09 CET"
> 
> source("../../R/readConfig.R")
> configurationFileName="post.dcf"
> eddyProcConfiguration <- compileAndValidateEddyProcConfiguration(configurationFileName)
Entries supplied by the web form:
                 SiteID             ustarFilter       ustarFilterMethod 
              "Mendota"                    "NO"                   "RTw" 
   ustarFilterSeasoning  ustarFilterUncertainty            isGapfilling 
           "Continuous"                   "YES"                   "YES" 
     temperatureVarName                   email          fileIdentifier 
                 "Tair" "golub.gosia@gmail.com"             "823600973" 
   REddyProcWebRevision 
                   "71" 
> sourceFunctions(eddyProcConfiguration)
> 
> time <- system.time(
+ 		retval <- processEddyData(eddyProcConfiguration=eddyProcConfiguration) 	# call as function for easier debugging with dump
+ )		
Loaded file input.txt with the following variables (units):
 *** Year(-) DoY(-) Hour(-) NEE(-) CH4_MDS(-) H(-) LE(-) Tair(-) Ustar_MDS(-) Tau_MDS(-) ws_MDS(-) rH(-) Press_MDS(-) PAR_MDS(-) Rg(-) Rnet_MDS(-) Precip_MDS(-) TW_0_MDS(-) CO2c_MDS(-) TW1_MDS(-) CO20_MDS(-)
Number of '-9999' convertered to NA: 201950
'data.frame':	17520 obs. of  21 variables:
 $ Year      : atomic  2017 2017 2017 2017 2017 2017 2017 2017 2017 2017 ...
  ..- attr(*, "varnames")= chr "Year"
  ..- attr(*, "units")= chr "-"
 $ DoY       : atomic  1 1 1 1 1 1 1 1 1 1 ...
  ..- attr(*, "varnames")= chr "DoY"
  ..- attr(*, "units")= chr "-"
 $ Hour      : atomic  0.5 1 1.5 2 2.5 3 3.5 4 4.5 5 ...
  ..- attr(*, "varnames")= chr "Hour"
  ..- attr(*, "units")= chr "-"
 $ NEE       : atomic  NA NA NA NA NA NA NA NA NA NA ...
  ..- attr(*, "varnames")= chr "NEE"
  ..- attr(*, "units")= chr "-"
 $ CH4_MDS   : atomic  NA NA NA NA NA NA NA NA NA NA ...
  ..- attr(*, "varnames")= chr "CH4_MDS"
  ..- attr(*, "units")= chr "-"
 $ H         : atomic  NA NA NA NA NA NA NA NA NA NA ...
  ..- attr(*, "varnames")= chr "H"
  ..- attr(*, "units")= chr "-"
 $ LE        : atomic  NA NA NA NA NA NA NA NA NA NA ...
  ..- attr(*, "varnames")= chr "LE"
  ..- attr(*, "units")= chr "-"
 $ Tair      : atomic  -5.7 -5.6 -5.6 -6.3 -6.5 -6.6 -6.5 -6.6 -6.5 -6.4 ...
  ..- attr(*, "varnames")= chr "Tair"
  ..- attr(*, "units")= chr "-"
 $ Ustar_MDS : atomic  NA NA NA NA NA NA NA NA NA NA ...
  ..- attr(*, "varnames")= chr "Ustar_MDS"
  ..- attr(*, "units")= chr "-"
 $ Tau_MDS   : atomic  NA NA NA NA NA NA NA NA NA NA ...
  ..- attr(*, "varnames")= chr "Tau_MDS"
  ..- attr(*, "units")= chr "-"
 $ ws_MDS    : atomic  NA NA NA NA NA NA NA NA NA NA ...
  ..- attr(*, "varnames")= chr "ws_MDS"
  ..- attr(*, "units")= chr "-"
 $ rH        : atomic  79 78 78.7 82.4 84.7 84.8 85.2 85.6 86.7 87 ...
  ..- attr(*, "varnames")= chr "rH"
  ..- attr(*, "units")= chr "-"
 $ Press_MDS : atomic  97.4 97.4 97.4 97.4 97.4 ...
  ..- attr(*, "varnames")= chr "Press_MDS"
  ..- attr(*, "units")= chr "-"
 $ PAR_MDS   : atomic  0 0 0 0 0 0 0 0 0 0 ...
  ..- attr(*, "varnames")= chr "PAR_MDS"
  ..- attr(*, "units")= chr "-"
 $ Rg        : atomic  0 0 0 0 0 0 0 0 0 0 ...
  ..- attr(*, "varnames")= chr "Rg"
  ..- attr(*, "units")= chr "-"
 $ Rnet_MDS  : atomic  NA NA NA NA NA NA NA NA NA NA ...
  ..- attr(*, "varnames")= chr "Rnet_MDS"
  ..- attr(*, "units")= chr "-"
 $ Precip_MDS: atomic  0 0 0 0 0 0 0 0 0 0 ...
  ..- attr(*, "varnames")= chr "Precip_MDS"
  ..- attr(*, "units")= chr "-"
 $ TW_0_MDS  : atomic  NA NA NA NA NA NA NA NA NA NA ...
  ..- attr(*, "varnames")= chr "TW_0_MDS"
  ..- attr(*, "units")= chr "-"
 $ CO2c_MDS  : atomic  NA NA NA NA NA NA NA NA NA NA ...
  ..- attr(*, "varnames")= chr "CO2c_MDS"
  ..- attr(*, "units")= chr "-"
 $ TW1_MDS   : atomic  NA NA NA NA NA NA NA NA NA NA ...
  ..- attr(*, "varnames")= chr "TW1_MDS"
  ..- attr(*, "units")= chr "-"
 $ CO20_MDS  : atomic  NA NA NA NA NA NA NA NA NA NA ...
  ..- attr(*, "varnames")= chr "CO20_MDS"
  ..- attr(*, "units")= chr "-"
Warning in validateInputData(inputData) :
  Columns CH4_MDS,Rnet_MDS,TW1_MDS have no data. They are not included in processing.
[1] "Calculating VPD from rH and Tair."
Converted time format 'YDH' to POSIX with column name 'DateTime'.
Data variables picked for gap filling (dataVariablesToFill):  NEE,LE,H,Rg,VPD,rH,Tair,Ustar_MDS,Tau_MDS,ws_MDS,Press_MDS,PAR_MDS,Precip_MDS,TW_0_MDS,CO2c_MDS,CO20_MDS 
No additional columns picked to keep in processing
New sEddyProc class for site 'Mendota'
[1] "------------- Gapfilling ---------------"
Initialized variable 'NEE' with 13273 real gaps for gap filling of all 17520 values (to estimate uncertainties).
Full MDS algorithm for gap filling of 'NEE' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
............................................................
.............................................................
........................................................11619
Look up table with window size of 14 days with Rg VPD Tair
...........................................................990
Look up table with window size of 7 days with Rg
.................................................2012
Mean diurnal course with window size of 0 days: .
............................313
Mean diurnal course with window size of 1 days: .
.........................109
Mean diurnal course with window size of 2 days: .
........................31
Look up table with window size of 21 days with Rg VPD Tair
........................21
Look up table with window size of 28 days with Rg VPD Tair
........................13
Look up table with window size of 35 days with Rg VPD Tair
........................34
Look up table with window size of 42 days with Rg VPD Tair
.......................33
Look up table with window size of 49 days with Rg VPD Tair
.......................7
Look up table with window size of 56 days with Rg VPD Tair
.......................12
Look up table with window size of 63 days with Rg VPD Tair
.......................39
Look up table with window size of 70 days with Rg VPD Tair
......................6
Look up table with window size of 14 days with Rg
......................315
Look up table with window size of 21 days with Rg
...................338
Look up table with window size of 28 days with Rg
................327
Look up table with window size of 35 days with Rg
.............336
Look up table with window size of 42 days with Rg
.........336
Look up table with window size of 49 days with Rg
......336
Look up table with window size of 56 days with Rg
..263
Look up table with window size of 63 days with Rg
0
Look up table with window size of 70 days with Rg
0
Mean diurnal course with window size of 7 days: .
15
Mean diurnal course with window size of 14 days: .
3
Mean diurnal course with window size of 21 days: .
0
Mean diurnal course with window size of 28 days: .
0
Mean diurnal course with window size of 35 days: .
0
Mean diurnal course with window size of 42 days: .
0
Mean diurnal course with window size of 49 days: .
0
Mean diurnal course with window size of 56 days: .
12
Finished gap filling of 'NEE' in 42 seconds. Artificial gaps filled: 17520, real gaps filled: 13273, unfilled (long) gaps: 0.
Initialized variable 'LE' with 13154 real gaps for gap filling of all 17520 values (to estimate uncertainties).
Full MDS algorithm for gap filling of 'LE' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
............................................................
.............................................................
........................................................11559
Look up table with window size of 14 days with Rg VPD Tair
...........................................................871
Look up table with window size of 7 days with Rg
..................................................2175
Mean diurnal course with window size of 0 days: .
.............................306
Mean diurnal course with window size of 1 days: .
..........................117
Mean diurnal course with window size of 2 days: .
........................37
Look up table with window size of 21 days with Rg VPD Tair
........................19
Look up table with window size of 28 days with Rg VPD Tair
........................16
Look up table with window size of 35 days with Rg VPD Tair
........................42
Look up table with window size of 42 days with Rg VPD Tair
.......................32
Look up table with window size of 49 days with Rg VPD Tair
.......................9
Look up table with window size of 56 days with Rg VPD Tair
.......................10
Look up table with window size of 63 days with Rg VPD Tair
.......................40
Look up table with window size of 70 days with Rg VPD Tair
......................5
Look up table with window size of 14 days with Rg
......................311
Look up table with window size of 21 days with Rg
...................343
Look up table with window size of 28 days with Rg
................327
Look up table with window size of 35 days with Rg
.............336
Look up table with window size of 42 days with Rg
.........336
Look up table with window size of 49 days with Rg
......336
Look up table with window size of 56 days with Rg
..263
Look up table with window size of 63 days with Rg
0
Look up table with window size of 70 days with Rg
0
Mean diurnal course with window size of 7 days: .
15
Mean diurnal course with window size of 14 days: .
3
Mean diurnal course with window size of 21 days: .
0
Mean diurnal course with window size of 28 days: .
0
Mean diurnal course with window size of 35 days: .
0
Mean diurnal course with window size of 42 days: .
0
Mean diurnal course with window size of 49 days: .
0
Mean diurnal course with window size of 56 days: .
12
Finished gap filling of 'LE' in 30 seconds. Artificial gaps filled: 17520, real gaps filled: 13154, unfilled (long) gaps: 0.
Initialized variable 'H' with 12870 real gaps for gap filling of all 17520 values (to estimate uncertainties).
Full MDS algorithm for gap filling of 'H' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
............................................................
.............................................................
........................................................11966
Look up table with window size of 14 days with Rg VPD Tair
.......................................................763
Look up table with window size of 7 days with Rg
...............................................2036
Mean diurnal course with window size of 0 days: .
...........................304
Mean diurnal course with window size of 1 days: .
........................118
Mean diurnal course with window size of 2 days: .
.......................45
Look up table with window size of 21 days with Rg VPD Tair
......................3
Look up table with window size of 28 days with Rg VPD Tair
......................1
Look up table with window size of 35 days with Rg VPD Tair
......................6
Look up table with window size of 42 days with Rg VPD Tair
......................0
Look up table with window size of 49 days with Rg VPD Tair
......................5
Look up table with window size of 56 days with Rg VPD Tair
......................5
Look up table with window size of 63 days with Rg VPD Tair
......................18
Look up table with window size of 70 days with Rg VPD Tair
......................1
Look up table with window size of 14 days with Rg
......................285
Look up table with window size of 21 days with Rg
...................336
Look up table with window size of 28 days with Rg
................327
Look up table with window size of 35 days with Rg
.............336
Look up table with window size of 42 days with Rg
.........336
Look up table with window size of 49 days with Rg
......336
Look up table with window size of 56 days with Rg
..263
Look up table with window size of 63 days with Rg
0
Look up table with window size of 70 days with Rg
0
Mean diurnal course with window size of 7 days: .
18
Mean diurnal course with window size of 14 days: .
0
Mean diurnal course with window size of 21 days: .
0
Mean diurnal course with window size of 28 days: .
0
Mean diurnal course with window size of 35 days: .
0
Mean diurnal course with window size of 42 days: .
0
Mean diurnal course with window size of 49 days: .
0
Mean diurnal course with window size of 56 days: .
12
Finished gap filling of 'H' in 28 seconds. Artificial gaps filled: 17520, real gaps filled: 12870, unfilled (long) gaps: 0.
Initialized variable 'Rg' with 480 real gaps for gap filling.
Restriced MDS algorithm for gap filling of 'Rg' with no meteo conditions and hence only MDC.
Mean diurnal course with window size of 0 days: .
....278
Mean diurnal course with window size of 1 days: .
..186
Mean diurnal course with window size of 2 days: .
16
Finished gap filling of 'Rg' in 0 seconds. Artificial gaps filled: 17520, real gaps filled: 480, unfilled (long) gaps: 0.
Initialized variable 'VPD' with 3293 real gaps for gap filling.
Limited MDS algorithm for gap filling of 'VPD' with LUT(Rg only) and MDC.
Look up table with window size of 7 days with Rg
................................1346
Mean diurnal course with window size of 0 days: .
...................26
Mean diurnal course with window size of 1 days: .
...................36
Mean diurnal course with window size of 2 days: .
..................0
Look up table with window size of 14 days with Rg
..................336
Look up table with window size of 21 days with Rg
...............336
Look up table with window size of 28 days with Rg
............336
Look up table with window size of 35 days with Rg
........336
Look up table with window size of 42 days with Rg
.....336
Look up table with window size of 49 days with Rg
..193
Look up table with window size of 56 days with Rg
0
Look up table with window size of 63 days with Rg
0
Look up table with window size of 70 days with Rg
0
Mean diurnal course with window size of 7 days: .
0
Mean diurnal course with window size of 14 days: .
0
Mean diurnal course with window size of 21 days: .
0
Mean diurnal course with window size of 28 days: .
0
Mean diurnal course with window size of 35 days: .
0
Mean diurnal course with window size of 42 days: .
0
Mean diurnal course with window size of 49 days: .
12
Finished gap filling of 'VPD' in 2 seconds. Artificial gaps filled: 17520, real gaps filled: 3293, unfilled (long) gaps: 0.
Initialized variable 'rH' with 2729 real gaps for gap filling.
Full MDS algorithm for gap filling of 'rH' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
...........................0
Look up table with window size of 14 days with Rg VPD Tair
...........................0
Look up table with window size of 7 days with Rg
...........................800
Mean diurnal course with window size of 0 days: .
...................20
Mean diurnal course with window size of 1 days: .
...................24
Mean diurnal course with window size of 2 days: .
..................0
Look up table with window size of 21 days with Rg VPD Tair
..................0
Look up table with window size of 28 days with Rg VPD Tair
..................0
Look up table with window size of 35 days with Rg VPD Tair
..................0
Look up table with window size of 42 days with Rg VPD Tair
..................0
Look up table with window size of 49 days with Rg VPD Tair
..................0
Look up table with window size of 56 days with Rg VPD Tair
..................0
Look up table with window size of 63 days with Rg VPD Tair
..................0
Look up table with window size of 70 days with Rg VPD Tair
..................0
Look up table with window size of 14 days with Rg
..................336
Look up table with window size of 21 days with Rg
...............336
Look up table with window size of 28 days with Rg
............336
Look up table with window size of 35 days with Rg
........336
Look up table with window size of 42 days with Rg
.....336
Look up table with window size of 49 days with Rg
..193
Look up table with window size of 56 days with Rg
0
Look up table with window size of 63 days with Rg
0
Look up table with window size of 70 days with Rg
0
Mean diurnal course with window size of 7 days: .
0
Mean diurnal course with window size of 14 days: .
0
Mean diurnal course with window size of 21 days: .
0
Mean diurnal course with window size of 28 days: .
0
Mean diurnal course with window size of 35 days: .
0
Mean diurnal course with window size of 42 days: .
0
Mean diurnal course with window size of 49 days: .
12
Finished gap filling of 'rH' in 14 seconds. Artificial gaps filled: 17520, real gaps filled: 2729, unfilled (long) gaps: 0.
Initialized variable 'Tair' with 2809 real gaps for gap filling.
Limited MDS algorithm for gap filling of 'Tair' with LUT(Rg only) and MDC.
Look up table with window size of 7 days with Rg
............................905
Mean diurnal course with window size of 0 days: .
...................7
Mean diurnal course with window size of 1 days: .
..................12
Mean diurnal course with window size of 2 days: .
..................0
Look up table with window size of 14 days with Rg
..................336
Look up table with window size of 21 days with Rg
...............336
Look up table with window size of 28 days with Rg
............336
Look up table with window size of 35 days with Rg
........336
Look up table with window size of 42 days with Rg
.....336
Look up table with window size of 49 days with Rg
..193
Look up table with window size of 56 days with Rg
0
Look up table with window size of 63 days with Rg
0
Look up table with window size of 70 days with Rg
0
Mean diurnal course with window size of 7 days: .
0
Mean diurnal course with window size of 14 days: .
0
Mean diurnal course with window size of 21 days: .
0
Mean diurnal course with window size of 28 days: .
0
Mean diurnal course with window size of 35 days: .
0
Mean diurnal course with window size of 42 days: .
0
Mean diurnal course with window size of 49 days: .
12
Finished gap filling of 'Tair' in 2 seconds. Artificial gaps filled: 17520, real gaps filled: 2809, unfilled (long) gaps: 0.
Warning in sFillInit(Var.s, QFVar.s, QFValue.n, FillAll.b) :
  sMDSGapFill::: The long gap between position 6849 and 17520 will not be filled!
Initialized variable 'Ustar_MDS' with 16175 real gaps for gap filling of all 6848 values (to estimate uncertainties).
Full MDS algorithm for gap filling of 'Ustar_MDS' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
............................................................
.........4582
Look up table with window size of 14 days with Rg VPD Tair
......................503
Look up table with window size of 7 days with Rg
.................1350
Mean diurnal course with window size of 0 days: .
....79
Mean diurnal course with window size of 1 days: .
...54
Mean diurnal course with window size of 2 days: .
..18
Look up table with window size of 21 days with Rg VPD Tair
..23
Look up table with window size of 28 days with Rg VPD Tair
..30
Look up table with window size of 35 days with Rg VPD Tair
..46
Look up table with window size of 42 days with Rg VPD Tair
.29
Look up table with window size of 49 days with Rg VPD Tair
.14
Look up table with window size of 56 days with Rg VPD Tair
.3
Look up table with window size of 63 days with Rg VPD Tair
.26
Look up table with window size of 70 days with Rg VPD Tair
2
Look up table with window size of 14 days with Rg
80
Look up table with window size of 21 days with Rg
1
Look up table with window size of 28 days with Rg
0
Look up table with window size of 35 days with Rg
0
Look up table with window size of 42 days with Rg
0
Look up table with window size of 49 days with Rg
0
Look up table with window size of 56 days with Rg
0
Look up table with window size of 63 days with Rg
0
Look up table with window size of 70 days with Rg
0
Mean diurnal course with window size of 7 days: .
3
Mean diurnal course with window size of 14 days: .
5
Finished gap filling of 'Ustar_MDS' in 4 seconds. Artificial gaps filled: 6848, real gaps filled: 16175, unfilled (long) gaps: 10672.
Warning in sFillInit(Var.s, QFVar.s, QFValue.n, FillAll.b) :
  sMDSGapFill::: The long gap between position 6849 and 17520 will not be filled!
Initialized variable 'Tau_MDS' with 16175 real gaps for gap filling of all 6848 values (to estimate uncertainties).
Full MDS algorithm for gap filling of 'Tau_MDS' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
............................................................
.........4582
Look up table with window size of 14 days with Rg VPD Tair
......................503
Look up table with window size of 7 days with Rg
.................1350
Mean diurnal course with window size of 0 days: .
....79
Mean diurnal course with window size of 1 days: .
...54
Mean diurnal course with window size of 2 days: .
..18
Look up table with window size of 21 days with Rg VPD Tair
..23
Look up table with window size of 28 days with Rg VPD Tair
..30
Look up table with window size of 35 days with Rg VPD Tair
..46
Look up table with window size of 42 days with Rg VPD Tair
.29
Look up table with window size of 49 days with Rg VPD Tair
.14
Look up table with window size of 56 days with Rg VPD Tair
.3
Look up table with window size of 63 days with Rg VPD Tair
.26
Look up table with window size of 70 days with Rg VPD Tair
2
Look up table with window size of 14 days with Rg
80
Look up table with window size of 21 days with Rg
1
Look up table with window size of 28 days with Rg
0
Look up table with window size of 35 days with Rg
0
Look up table with window size of 42 days with Rg
0
Look up table with window size of 49 days with Rg
0
Look up table with window size of 56 days with Rg
0
Look up table with window size of 63 days with Rg
0
Look up table with window size of 70 days with Rg
0
Mean diurnal course with window size of 7 days: .
3
Mean diurnal course with window size of 14 days: .
5
Finished gap filling of 'Tau_MDS' in 4 seconds. Artificial gaps filled: 6848, real gaps filled: 16175, unfilled (long) gaps: 10672.
Warning in sFillInit(Var.s, QFVar.s, QFValue.n, FillAll.b) :
  sMDSGapFill::: The long gap between position 6849 and 17520 will not be filled!
Initialized variable 'ws_MDS' with 16158 real gaps for gap filling of all 6848 values (to estimate uncertainties).
Full MDS algorithm for gap filling of 'ws_MDS' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
............................................................
.........4538
Look up table with window size of 14 days with Rg VPD Tair
.......................527
Look up table with window size of 7 days with Rg
.................1371
Mean diurnal course with window size of 0 days: .
....76
Mean diurnal course with window size of 1 days: .
...56
Mean diurnal course with window size of 2 days: .
..16
Look up table with window size of 21 days with Rg VPD Tair
..25
Look up table with window size of 28 days with Rg VPD Tair
..34
Look up table with window size of 35 days with Rg VPD Tair
..42
Look up table with window size of 42 days with Rg VPD Tair
.31
Look up table with window size of 49 days with Rg VPD Tair
.10
Look up table with window size of 56 days with Rg VPD Tair
.4
Look up table with window size of 63 days with Rg VPD Tair
.28
Look up table with window size of 70 days with Rg VPD Tair
6
Look up table with window size of 14 days with Rg
73
Look up table with window size of 21 days with Rg
1
Look up table with window size of 28 days with Rg
0
Look up table with window size of 35 days with Rg
0
Look up table with window size of 42 days with Rg
0
Look up table with window size of 49 days with Rg
0
Look up table with window size of 56 days with Rg
0
Look up table with window size of 63 days with Rg
0
Look up table with window size of 70 days with Rg
0
Mean diurnal course with window size of 7 days: .
5
Mean diurnal course with window size of 14 days: .
5
Finished gap filling of 'ws_MDS' in 4 seconds. Artificial gaps filled: 6848, real gaps filled: 16158, unfilled (long) gaps: 10672.
Warning in sFillInit(Var.s, QFVar.s, QFValue.n, FillAll.b) :
  sMDSGapFill::: The long gap between position 5637 and 17520 will not be filled!
Initialized variable 'Press_MDS' with 12345 real gaps for gap filling of all 5636 values (to estimate uncertainties).
Full MDS algorithm for gap filling of 'Press_MDS' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
........................................................5184
Look up table with window size of 14 days with Rg VPD Tair
....43
Look up table with window size of 7 days with Rg
....326
Mean diurnal course with window size of 0 days: .
72
Mean diurnal course with window size of 1 days: .
11
Finished gap filling of 'Press_MDS' in 2 seconds. Artificial gaps filled: 5636, real gaps filled: 12345, unfilled (long) gaps: 11884.
Initialized variable 'PAR_MDS' with 480 real gaps for gap filling of all 17520 values (to estimate uncertainties).
Full MDS algorithm for gap filling of 'PAR_MDS' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
............................................................
.............................................................
........................................................13790
Look up table with window size of 14 days with Rg VPD Tair
.....................................25
Look up table with window size of 7 days with Rg
.....................................3225
Mean diurnal course with window size of 0 days: .
....278
Mean diurnal course with window size of 1 days: .
..186
Mean diurnal course with window size of 2 days: .
16
Finished gap filling of 'PAR_MDS' in 12 seconds. Artificial gaps filled: 17520, real gaps filled: 480, unfilled (long) gaps: 0.
Warning in sFillInit(Var.s, QFVar.s, QFValue.n, FillAll.b) :
  sMDSGapFill::: The long gap between position 5637 and 17520 will not be filled!
Initialized variable 'Precip_MDS' with 11899 real gaps for gap filling of all 5636 values (to estimate uncertainties).
Full MDS algorithm for gap filling of 'Precip_MDS' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
........................................................5227
Look up table with window size of 14 days with Rg VPD Tair
....8
Look up table with window size of 7 days with Rg
....318
Mean diurnal course with window size of 0 days: .
83
Finished gap filling of 'Precip_MDS' in 2 seconds. Artificial gaps filled: 5636, real gaps filled: 11899, unfilled (long) gaps: 11884.
Warning in sFillInit(Var.s, QFVar.s, QFValue.n, FillAll.b) :
  sMDSGapFill::: The long gap between position 1 and 3843 will not be filled!
Initialized variable 'TW_0_MDS' with 6393 real gaps for gap filling of all 13677 values (to estimate uncertainties).
Full MDS algorithm for gap filling of 'TW_0_MDS' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
............................................................
.............................................................
.................10167
Look up table with window size of 14 days with Rg VPD Tair
...................................41
Look up table with window size of 7 days with Rg
..................................1038
Mean diurnal course with window size of 0 days: .
........................426
Mean diurnal course with window size of 1 days: .
....................4
Mean diurnal course with window size of 2 days: .
....................0
Look up table with window size of 21 days with Rg VPD Tair
....................0
Look up table with window size of 28 days with Rg VPD Tair
....................0
Look up table with window size of 35 days with Rg VPD Tair
....................0
Look up table with window size of 42 days with Rg VPD Tair
....................0
Look up table with window size of 49 days with Rg VPD Tair
....................0
Look up table with window size of 56 days with Rg VPD Tair
....................0
Look up table with window size of 63 days with Rg VPD Tair
....................0
Look up table with window size of 70 days with Rg VPD Tair
....................0
Look up table with window size of 14 days with Rg
....................336
Look up table with window size of 21 days with Rg
................334
Look up table with window size of 28 days with Rg
.............336
Look up table with window size of 35 days with Rg
.........336
Look up table with window size of 42 days with Rg
......336
Look up table with window size of 49 days with Rg
...311
Look up table with window size of 56 days with Rg
0
Look up table with window size of 63 days with Rg
0
Look up table with window size of 70 days with Rg
0
Mean diurnal course with window size of 7 days: .
0
Mean diurnal course with window size of 14 days: .
0
Mean diurnal course with window size of 21 days: .
0
Mean diurnal course with window size of 28 days: .
0
Mean diurnal course with window size of 35 days: .
0
Mean diurnal course with window size of 42 days: .
0
Mean diurnal course with window size of 49 days: .
12
Finished gap filling of 'TW_0_MDS' in 21 seconds. Artificial gaps filled: 13677, real gaps filled: 6393, unfilled (long) gaps: 3843.
Warning in sFillInit(Var.s, QFVar.s, QFValue.n, FillAll.b) :
  sMDSGapFill::: The long gap between position 6849 and 17520 will not be filled!
Initialized variable 'CO2c_MDS' with 16296 real gaps for gap filling of all 6848 values (to estimate uncertainties).
Full MDS algorithm for gap filling of 'CO2c_MDS' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
............................................................
.........4512
Look up table with window size of 14 days with Rg VPD Tair
.......................569
Look up table with window size of 7 days with Rg
.................1353
Mean diurnal course with window size of 0 days: .
....74
Mean diurnal course with window size of 1 days: .
...61
Mean diurnal course with window size of 2 days: .
..18
Look up table with window size of 21 days with Rg VPD Tair
..20
Look up table with window size of 28 days with Rg VPD Tair
..36
Look up table with window size of 35 days with Rg VPD Tair
..42
Look up table with window size of 42 days with Rg VPD Tair
.33
Look up table with window size of 49 days with Rg VPD Tair
.6
Look up table with window size of 56 days with Rg VPD Tair
.7
Look up table with window size of 63 days with Rg VPD Tair
.30
Look up table with window size of 70 days with Rg VPD Tair
5
Look up table with window size of 14 days with Rg
69
Look up table with window size of 21 days with Rg
5
Look up table with window size of 28 days with Rg
0
Look up table with window size of 35 days with Rg
0
Look up table with window size of 42 days with Rg
0
Look up table with window size of 49 days with Rg
0
Look up table with window size of 56 days with Rg
0
Look up table with window size of 63 days with Rg
0
Look up table with window size of 70 days with Rg
0
Mean diurnal course with window size of 7 days: .
3
Mean diurnal course with window size of 14 days: .
5
Finished gap filling of 'CO2c_MDS' in 4 seconds. Artificial gaps filled: 6848, real gaps filled: 16296, unfilled (long) gaps: 10672.
Warning in sFillInit(Var.s, QFVar.s, QFValue.n, FillAll.b) :
  sMDSGapFill::: The long gap between position 1 and 5310 will not be filled!
Initialized variable 'CO20_MDS' with 8154 real gaps for gap filling of all 12210 values (to estimate uncertainties).
Full MDS algorithm for gap filling of 'CO20_MDS' with LUT(Rg, VPD, Tair) and MDC.
Look up table with window size of 7 days with Rg VPD Tair
............................................................
.............................................................
...8757
Look up table with window size of 14 days with Rg VPD Tair
..................................76
Look up table with window size of 7 days with Rg
.................................988
Mean diurnal course with window size of 0 days: .
.......................375
Mean diurnal course with window size of 1 days: .
....................18
Mean diurnal course with window size of 2 days: .
...................6
Look up table with window size of 21 days with Rg VPD Tair
...................0
Look up table with window size of 28 days with Rg VPD Tair
...................0
Look up table with window size of 35 days with Rg VPD Tair
...................0
Look up table with window size of 42 days with Rg VPD Tair
...................0
Look up table with window size of 49 days with Rg VPD Tair
...................0
Look up table with window size of 56 days with Rg VPD Tair
...................0
Look up table with window size of 63 days with Rg VPD Tair
...................0
Look up table with window size of 70 days with Rg VPD Tair
...................0
Look up table with window size of 14 days with Rg
...................337
Look up table with window size of 21 days with Rg
................321
Look up table with window size of 28 days with Rg
.............336
Look up table with window size of 35 days with Rg
.........336
Look up table with window size of 42 days with Rg
......336
Look up table with window size of 49 days with Rg
...311
Look up table with window size of 56 days with Rg
0
Look up table with window size of 63 days with Rg
0
Look up table with window size of 70 days with Rg
0
Mean diurnal course with window size of 7 days: .
1
Mean diurnal course with window size of 14 days: .
0
Mean diurnal course with window size of 21 days: .
0
Mean diurnal course with window size of 28 days: .
0
Mean diurnal course with window size of 35 days: .
0
Mean diurnal course with window size of 42 days: .
0
Mean diurnal course with window size of 49 days: .
12
Finished gap filling of 'CO20_MDS' in 19 seconds. Artificial gaps filled: 12210, real gaps filled: 8154, unfilled (long) gaps: 5310.
Saved plot to: ./Mendota_2017_FP_NEE.pdf
Saved plot to: ./Mendota_2017_Flux_NEE.pdf
Saved plot to: ./Mendota_2017_FP_LE.pdf
Saved plot to: ./Mendota_2017_Flux_LE.pdf
Saved plot to: ./Mendota_2017_FP_H.pdf
Saved plot to: ./Mendota_2017_Flux_H.pdf
Saved plot to: ./Mendota_2017_FP_Rg.pdf
Saved plot to: ./Mendota_2017_Flux_Rg.pdf
Saved plot to: ./Mendota_2017_FP_VPD.pdf
Saved plot to: ./Mendota_2017_Flux_VPD.pdf
Saved plot to: ./Mendota_2017_FP_rH.pdf
Saved plot to: ./Mendota_2017_Flux_rH.pdf
Saved plot to: ./Mendota_2017_FP_Tair.pdf
Saved plot to: ./Mendota_2017_Flux_Tair.pdf
Saved plot to: ./Mendota_2017_FP_Ustar_MDS.pdf
Saved plot to: ./Mendota_2017_Flux_Ustar_MDS.pdf
Saved plot to: ./Mendota_2017_FP_Tau_MDS.pdf
Saved plot to: ./Mendota_2017_Flux_Tau_MDS.pdf
Saved plot to: ./Mendota_2017_FP_ws_MDS.pdf
Saved plot to: ./Mendota_2017_Flux_ws_MDS.pdf
Saved plot to: ./Mendota_2017_FP_Press_MDS.pdf
Saved plot to: ./Mendota_2017_Flux_Press_MDS.pdf
Saved plot to: ./Mendota_2017_FP_PAR_MDS.pdf
Saved plot to: ./Mendota_2017_Flux_PAR_MDS.pdf
Saved plot to: ./Mendota_2017_FP_Precip_MDS.pdf
Saved plot to: ./Mendota_2017_Flux_Precip_MDS.pdf
Saved plot to: ./Mendota_2017_FP_TW_0_MDS.pdf
Saved plot to: ./Mendota_2017_Flux_TW_0_MDS.pdf
Saved plot to: ./Mendota_2017_FP_CO2c_MDS.pdf
Saved plot to: ./Mendota_2017_Flux_CO2c_MDS.pdf
Saved plot to: ./Mendota_2017_FP_CO20_MDS.pdf
Saved plot to: ./Mendota_2017_Flux_CO20_MDS.pdf
Saved plot to: ./Mendota_2017_FP_NEE_f.pdf
Saved plot to: ./Mendota_2017_DC_NEE_f.pdf
Saved plot to: ./Mendota_2017_DSumU_NEE_f.pdf
Saved plot to: ./Mendota_2017_Flux_NEE_f.pdf
Saved plot to: ./Mendota_2017_FP_LE_f.pdf
Saved plot to: ./Mendota_2017_DC_LE_f.pdf
Saved plot to: ./Mendota_2017_DSumU_LE_f.pdf
Saved plot to: ./Mendota_2017_Flux_LE_f.pdf
Saved plot to: ./Mendota_2017_FP_H_f.pdf
Saved plot to: ./Mendota_2017_DC_H_f.pdf
Saved plot to: ./Mendota_2017_DSumU_H_f.pdf
Saved plot to: ./Mendota_2017_Flux_H_f.pdf
Saved plot to: ./Mendota_2017_FP_Rg_f.pdf
Saved plot to: ./Mendota_2017_DC_Rg_f.pdf
Saved plot to: ./Mendota_2017_DSum_Rg_f.pdf
Saved plot to: ./Mendota_2017_Flux_Rg_f.pdf
Saved plot to: ./Mendota_2017_FP_VPD_f.pdf
Saved plot to: ./Mendota_2017_DC_VPD_f.pdf
Saved plot to: ./Mendota_2017_DSum_VPD_f.pdf
Saved plot to: ./Mendota_2017_Flux_VPD_f.pdf
Saved plot to: ./Mendota_2017_FP_rH_f.pdf
Saved plot to: ./Mendota_2017_DC_rH_f.pdf
Saved plot to: ./Mendota_2017_DSum_rH_f.pdf
Saved plot to: ./Mendota_2017_Flux_rH_f.pdf
Saved plot to: ./Mendota_2017_FP_Tair_f.pdf
Saved plot to: ./Mendota_2017_DC_Tair_f.pdf
Saved plot to: ./Mendota_2017_DSum_Tair_f.pdf
Saved plot to: ./Mendota_2017_Flux_Tair_f.pdf
Saved plot to: ./Mendota_2017_FP_Ustar_MDS_f.pdf
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: June!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: July!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: August!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: September!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: October!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: November!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i) :
  .sPlotDiurnalCycleM::: No data available for month: December!
Saved plot to: ./Mendota_2017_DC_Ustar_MDS_f.pdf
Saved plot to: ./Mendota_2017_DSumU_Ustar_MDS_f.pdf
Saved plot to: ./Mendota_2017_Flux_Ustar_MDS_f.pdf
Saved plot to: ./Mendota_2017_FP_Tau_MDS_f.pdf
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: June!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: July!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: August!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: September!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: October!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: November!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i) :
  .sPlotDiurnalCycleM::: No data available for month: December!
Saved plot to: ./Mendota_2017_DC_Tau_MDS_f.pdf
Saved plot to: ./Mendota_2017_DSumU_Tau_MDS_f.pdf
Saved plot to: ./Mendota_2017_Flux_Tau_MDS_f.pdf
Saved plot to: ./Mendota_2017_FP_ws_MDS_f.pdf
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: June!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: July!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: August!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: September!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: October!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: November!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i) :
  .sPlotDiurnalCycleM::: No data available for month: December!
Saved plot to: ./Mendota_2017_DC_ws_MDS_f.pdf
Saved plot to: ./Mendota_2017_DSumU_ws_MDS_f.pdf
Saved plot to: ./Mendota_2017_Flux_ws_MDS_f.pdf
Saved plot to: ./Mendota_2017_FP_Press_MDS_f.pdf
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: May!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: June!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: July!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: August!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: September!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: October!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: November!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i) :
  .sPlotDiurnalCycleM::: No data available for month: December!
Saved plot to: ./Mendota_2017_DC_Press_MDS_f.pdf
Saved plot to: ./Mendota_2017_DSumU_Press_MDS_f.pdf
Saved plot to: ./Mendota_2017_Flux_Press_MDS_f.pdf
Saved plot to: ./Mendota_2017_FP_PAR_MDS_f.pdf
Saved plot to: ./Mendota_2017_DC_PAR_MDS_f.pdf
Saved plot to: ./Mendota_2017_DSumU_PAR_MDS_f.pdf
Saved plot to: ./Mendota_2017_Flux_PAR_MDS_f.pdf
Saved plot to: ./Mendota_2017_FP_Precip_MDS_f.pdf
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: May!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: June!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: July!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: August!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: September!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: October!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: November!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i) :
  .sPlotDiurnalCycleM::: No data available for month: December!
Saved plot to: ./Mendota_2017_DC_Precip_MDS_f.pdf
Saved plot to: ./Mendota_2017_DSumU_Precip_MDS_f.pdf
Saved plot to: ./Mendota_2017_Flux_Precip_MDS_f.pdf
Saved plot to: ./Mendota_2017_FP_TW_0_MDS_f.pdf
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: January!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: February!
Saved plot to: ./Mendota_2017_DC_TW_0_MDS_f.pdf
Saved plot to: ./Mendota_2017_DSumU_TW_0_MDS_f.pdf
Saved plot to: ./Mendota_2017_Flux_TW_0_MDS_f.pdf
Saved plot to: ./Mendota_2017_FP_CO2c_MDS_f.pdf
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: June!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: July!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: August!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: September!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: October!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: November!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i) :
  .sPlotDiurnalCycleM::: No data available for month: December!
Saved plot to: ./Mendota_2017_DC_CO2c_MDS_f.pdf
Saved plot to: ./Mendota_2017_DSumU_CO2c_MDS_f.pdf
Saved plot to: ./Mendota_2017_Flux_CO2c_MDS_f.pdf
Saved plot to: ./Mendota_2017_FP_CO20_MDS_f.pdf
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: January!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: February!
Warning in .self$.sPlotDiurnalCycleM(Var.s, QFVar.s, QFValue.n, Month.i,  :
  .sPlotDiurnalCycleM::: No data available for month: March!
Saved plot to: ./Mendota_2017_DC_CO20_MDS_f.pdf
Saved plot to: ./Mendota_2017_DSumU_CO20_MDS_f.pdf
Saved plot to: ./Mendota_2017_Flux_CO20_MDS_f.pdf
Number of NA convertered to '-9999': 1263350
Wrote tab separated textfile: output.txt
> 
> print("converting generated output pdf files to png format for display on results page.") # done in shell script 
[1] "converting generated output pdf files to png format for display on results page."
> 
> # write logEntry that will be appended by to reddy_jobs_out.txt by reddy_bjobs.sh
> logEntry <- paste( time["user.self"], retval$mode, retval$inputSize, sep="," )
> cat( logEntry, file="logEntry.txt")
> 
> 
> 
> proc.time()
   user  system elapsed 
230.062   0.492 231.002 
