################################################################################
# This is a configuration file for PALM. It must be named: .palm.config.<suffix>
# in order to use it, call palmbuild and palmrun with the option: -h <suffix>
# Documentation: https://palm.muk.uni-hannover.de/trac/wiki/doc/app/jobcontrol
################################################################################
#
#-------------------------------------------------------------------------------
# General compiler and host configuration section.
# Variable declaration lines must start with a percent character
# Internal variables can be used as {{VARIABLE_NAME}}. Please see documentation.
#-------------------------------------------------------------------------------
%base_directory      /glade/work/sreenath/palm/current_version
%base_data           /glade/work/sreenath/palm/current_version/JOBS
%source_path         /glade/work/sreenath/palm/current_version/trunk/SOURCE
%user_source_path    /glade/work/sreenath/palm/current_version/JOBS/$run_identifier/USER_CODE
%fast_io_catalog     /glade/work/sreenath/palm/current_version/tmp
%local_jobcatalog    /glade/work/sreenath/palm/current_version/job_logfiles
%restart_data_path   $fast_io_catalog
%output_data_path    $base_data
#%remote_jobcatalog   <path/to/directory>
#
%local_ip            127.0.0.1
%local_hostname      cheyenne4
%local_username      sreenath
#
#%remote_ip           <ip>
#%remote_hostname     <hostname>
#%remote_loginnode    <loginnode>
#%remote_username     <username>
#%ssh_key             ~/.ssh/id_rsa
#
#%defaultqueue        <queue>
#%submit_command      /opt/moab/default/bin/msub -E
#
%compiler_name       /glade/u/apps/opt/intel/2017u1/impi/2017.1.132/intel64/bin/mpif90
%compiler_name_ser   /glade/u/apps/ch/opt/ncarcompilers/0.5.0/intel/17.0.1/ifort
%cpp_options         -cpp -D__intel_compiler -D__parallel -DMPI_REAL=MPI_DOUBLE_PRECISION -DMPI_2REAL=MPI_2DOUBLE_PRECISION -D__netcdf -D__netcdf4 -D__fftw
%make_options        -j 72
%compiler_options    -O3 -fp-model source -fno-alias -fpe0 -ftz -no-prec-div -no-prec-sqrt -ip -nbs -diag-disable 8290,8291 -I /glade/u/apps/ch/opt/netcdf/4.6.3/intel/17.0.1/include
%linker_options      -O3 -fp-model source -fno-alias -fpe0 -ftz -no-prec-div -no-prec-sqrt -ip -nbs -diag-disable 8290,8291 /glade/u/apps/ch/opt/netcdf/4.6.3/intel/17.0.1/lib/libnetcdff.so /glade/u/apps/ch/opt/fftw/3.3.8/intel/17.0.1/lib/libfftw3.so
%execute_command     mpirun -n {{mpi_tasks}} ./palm
#%memory              2300
#%module_commands     module switch craype-ivybridge craype-haswell; module load fftw cray-hdf5-parallel cray-netcdf-hdf5parallel
#%login_init_cmd      .execute_special_profile
#
#-------------------------------------------------------------------------------
# Directives to be used for batch jobs
# Lines must start with "BD:". If $-characters are required, hide them with \
# Internal variables can be used as {{variable_name}}. Please see documentation.
#-------------------------------------------------------------------------------
BD:#!/bin/bash
BD:#PBS -N {{job_id}}
BD:#PBS -l walltime={{cpu_hours}}:{{cpu_minutes}}:{{cpu_seconds}}
BD:#PBS -l nodes={{nodes}}:ppn={{tasks_per_node}}
BD:#PBS -o {{job_protocol_file}}
BD:#PBS -j oe
BD:#PBS -q {{queue}}
#
#-------------------------------------------------------------------------------
# Directives for batch jobs used to send back the jobfiles from a remote to a local host
# Lines must start with "BDT:". If $-characters are required, excape them with triple backslash
# Internal variables can be used as {{variable_name}}. Please see documentation.
#-------------------------------------------------------------------------------
BDT:#!/bin/bash
BDT:#PBS -N job_protocol_transfer
BDT:#PBS -l walltime=00:30:00
BDT:#PBS -l nodes=1:ppn=1
BDT:#PBS -o {{job_transfer_protocol_file}}
BDT:#PBS -j oe
BDT:#PBS -q dataq
#
#-------------------------------------------------------------------------------
# INPUT-commands. These commands are executed before running PALM 
# Lines must start with "IC:" 
#-------------------------------------------------------------------------------
IC:ulimit  -s unlimited
#
#-------------------------------------------------------------------------------
# ERROR-commands. These commands are executed when PALM terminates abnormally
# Lines must start with "EC:" 
#-------------------------------------------------------------------------------
EC:[[ $locat = execution ]]  &&  cat  RUN_CONTROL
#
#-------------------------------------------------------------------------------
# OUTPUT-commands. These commands are executed when PALM terminates normally
# Lines must start with "OC:" 
#-------------------------------------------------------------------------------
#
# Combine 1D- and 3D-profile output (these files are not usable for plotting)
OC:[[ -f LIST_PROFIL_1D     ]]  &&  cat  LIST_PROFIL_1D  >>  LIST_PROFILE
OC:[[ -f LIST_PROFIL        ]]  &&  cat  LIST_PROFIL     >>  LIST_PROFILE
#
# Combine all particle information files
OC:[[ -f PARTICLE_INFOS/_0000 ]]  &&  cat  PARTICLE_INFOS/* >> PARTICLE_INFO